Wednesday, February 13, 2019

Hypothesis : GSDM pyroptosis is a parasite window for Eosinophils

Hypothesis:
Parasitic cell death through inflammasome which create GSDM pores are not just  to release il-1Beta but a 10-20 nm window revealing a piece of the parasite which also sticks to GSDM for IgE antibody binding triggering Eosinophils .

3 types of inflammasomes (wiki)
NLRP1 which forms when lethal toxins detected
NLRP3 which forms when PAMPS whole pathogens or microbial toxins are detected
IPAF which forms when flagellins are detected

The inflammasomes are active caspase-1  which cleave and create GSDM.  Groups of which form the pores at the cells plasma membrane.

GSDM also binds cardolipin on parasites/mycobacteria/gram positive bacteria which would cause them to plug up the GSDM pore.

Cell Death
https://www.nature.com/articles/cr2017133/figures/1

inflammasome and GSDMD creates a pore in the plasma membrane
https://www.ncbi.nlm.nih.gov/pubmed/27383986?dopt=Abstract

20nm pore GSDMD
http://emboj.embopress.org/content/35/16/1766.abstract

GSDMD is the mechanism of cell death
http://emboj.embopress.org/content/35/16/1766.abstract

magnesium moves TH1 to TH2
https://www.ncbi.nlm.nih.gov/pubmed/23816766

Antibodies in T.gondii infections
https://www.ncbi.nlm.nih.gov/pubmed/24864110

GSDMD has a strong link to asthma
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5135378/

IgE airway inflammation asthma
https://www.ncbi.nlm.nih.gov/pubmed/17760568

cardiolipin antibodies and t.gondii
https://eujournal.org/index.php/esj/article/view/4213

cardiolipin and mycobacteria
https://www.ncbi.nlm.nih.gov/pubmed/23910993

GSDMD pore induced traps (pit)
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5565696/

diabetes and chronic back pain
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5510921/

GSDMC gene and chronic back pain

Hypothesis: using Human protein atlas : GSDM expression changes based on hormone

GSDMA  IGF-1 of skin and umbilical cord 

GSDMB growth hormone of the lungs and peyer patches (colon/intestine)

GSDMC has been linked to diabetes. The spleen grows into pancreas and it is in this area that insulin is high.

GSDMD expressed in all tissue types
https://www.proteinatlas.org/ENSG00000104518-GSDMD/tissue

Why would your body have 4 types? are they matching up with the antibodies somehow?

IgE at the skin's IGF-1  with the GSDMA pore?
IgA , GH with GSDMB ?
IgG1,  insulin with GSDMC ?

looking at the disulfide bridges
https://www.researchgate.net/figure/A-Immunoglobulin-domain-structures-of-human-IgG1-4-and-IgA1-2-Schematic-representations_fig1_273470442

Septic shock from staph followed by Berger Disease (IgA)
https://www.ncbi.nlm.nih.gov/pubmed/12671604

septic shock patients and high GSDMB expression
https://www.ncbi.nlm.nih.gov/pubmed/30321352

GSDMD with macrophages which are the sentinel all over

phagocytosis with GSDMD
http://jem.rupress.org/content/213/10/2113

Note that this fits with il-5 not just triggering differentiation of eosinophils but switching the dimer IgA to the monomer form with tends to come from bone marrow. (at the mucosal region)

so during a T gondii infection damaged epithelial cells would release il-33 which triggers TH2 to make il-5 and il-13.  il-33 would trigger the trogocytosis of mhc with bacteria from the cytosol to basophils who would then show Th2.

Eosinophis would then use Fc antibody binding to phagocytosis infected cells which it would then internally destroy them.  The IgA antibody would would bind through the GSDM pore on cells that had cytosolic receptors (nods) triggered by t. gondii.

Trogocytosis on mhc from mD to  basophil
https://academic.oup.com/intimm/article/30/9/391/4946541

TSLP thymic stromal lymphopoietin creates the langerhans and converts th2 into Tfh.

What still needs to be elucidated is the relationship of the inflammasome with the GSDM pore. If the main purpose of the pore is to serve as a window to infections then the the virally triggered inflammasomes favor apoptosis not GSDM.

The AIM2 inflammasome appears to be connected to nuclear infections which would suggest that no GSDM pore would be formed since the infection is not in the cytosol.  The NLRP3 inflammasomes on the other had seems to sway between apoptosis and pyroptosis.

AIM2 inflammasome and apoptosis, NLRP3 inflammasome and pyrotosis..and the fuzzy zone
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3741496/


Viral infections tend to end with apoptosis while parasitic/bacterial  infections need to end with pyroptosis.

extra cellular bacteria trigger tlrs to create ifn lambda
http://www.jimmunol.org/content/jimmunol/early/2017/09/27/jimmunol.1700250.full.pdf

ifn lambda from not just golgi viruses but from Bacteria in the cytosol
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5328987/

Perhaps with different IFN triggered receptors (IFN Beta or IFN lambda) the NLRP3 inflammasome behaves differently?

IFNbeta receptors trigger caspase 8. FasL triggers caspase 8 too.






Sunday, February 10, 2019

Cytosol receptors and IFNbeta (still working on this)

There are cytosol receptors that bind infections and then alert the immune system through secreting IFNbeta .  Nod1 and nod2 bind bacterial/parasitic infections of the cytosol while rig-1and mda5 bind viruses of the cytosol.

Cytosol bacteria or parasites:

Nod2 and IFNbeta
https://www.frontiersin.org/articles/10.3389/fimmu.2016.00652/full

Nod1 and IFNalpha ?

Nod1 and th17
https://www.sciencedirect.com/science/article/pii/S1074761307002129

Nod1 and Rip-2
https://www.cell.com/cell-host-microbe/fulltext/S1931-3128(14)00135-8

does nod1 and nod2 both use Rip-2?

Rip-2 and Th17
http://grantome.com/grant/NIH/R01-AI117968-03

nod 2 and t.gondii
https://www.ncbi.nlm.nih.gov/pubmed/19881508

nod2 and mycobacteria
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4438743/
https://www.ncbi.nlm.nih.gov/pubmed/25483349
https://www.karger.com/Article/PDF/341472

nod1 and listeria
https://iai.asm.org/content/77/7/2908

nod1 and campylobacteria
https://www.ncbi.nlm.nih.gov/pubmed/17521327

nod1 and inflammasome
http://www.jimmunol.org/content/193/9/4548



Cytosol viruses:

rig-1 and mda5 and IFNbeta
https://www.ncbi.nlm.nih.gov/pubmed/29102119

rig-1 and MDA5 (viral cytosol receptors)
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4107945/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3177755/

inflammasome and rig-1
https://www.cell.com/trends/microbiology/pdf/S0966-842X(14)00198-X.pdf

rig-1 and MDA5 triggered by different types of cytosol viruses
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2224404/

mda5 flu
https://www.ncbi.nlm.nih.gov/pubmed/26074083

An infected cell secretes ifnbeta which sets in motion the pathways for cytosol immune system . The immune system then determines which type of cytosol infection it is dealing with.

Eosinophils and ifn beta
https://www.frontiersin.org/articles/10.3389/fimmu.2018.02330/full

ifn beta induces il-12 from macrophages
https://www.ncbi.nlm.nih.gov/pubmed/9781808

ifn beta induces b7-H1
https://www.ncbi.nlm.nih.gov/pubmed/15342209

ifn-beta il-12 causes TH1 producing ifn gamma
https://www.ncbi.nlm.nih.gov/pubmed/14607924